PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10240.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 420aa    MW: 48189.7 Da    PI: 4.6631
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10240.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.62.1e-2261483128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeek..ew..yfFskrdkkyatgkrknra. 77 
                               G+rFhPtd+el+  +L + +++++l+ ++ i+++d+yk+ePw    +        ++++  ++  yf s+r+k+++++ r +r+ 
  Sme2.5_10240.1_g00004.1   6 EGYRFHPTDSELL-TFLLRFLAQQPLRDDDYISHLDVYKHEPWVTYdNgrhcgG--EDDRdtSIcrYFISPRHKNKEENGRFKRTv 88 
                              7************.89999******999999************99633554331..2223223367******************75 PP

                      NAM  78 ....tksgyWkatgkdkevlsk....kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                                   k g Wk++ k k+v++     + + +g kk+L +  ++++  +   +W+m+ey+l
  Sme2.5_10240.1_g00004.1  89 lgvcGKVGSWKQQDKGKKVMTMnnrnNAAIIGYKKSLSYEpTEKSDCPDDGKWLMKEYSL 148
                              66655589***********99855544455*********95557777889********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.874172IPR003441NAC domain
SuperFamilySSF1019416.28E-226171IPR003441NAC domain
PfamPF023654.1E-156148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MELYEEGYRF HPTDSELLTF LLRFLAQQPL RDDDYISHLD VYKHEPWVTY DNGRHCGGED  60
DRDTSICRYF ISPRHKNKEE NGRFKRTVLG VCGKVGSWKQ QDKGKKVMTM NNRNNAAIIG  120
YKKSLSYEPT EKSDCPDDGK WLMKEYSLCE TMMKRLTNSA FRNYIICSIK RKCKKGSSDG  180
PGRSSVLTIR DFSNEEKVDI SGVNSFDQRR MDQEYNVVEC QGASSSGVKN DDVLWLTTTT  240
QIQQFRTSEM LEINLPAHDL PEDCVNEDHT AYWEVLANHT TSFVELLTGG DDSIRNNQVN  300
PDDELMTHFN FFEQATVESN QENGPLGLTA PLSQIPEIFD RGDTLLEKHQ TQNPPEESET  360
LWETEEISSM VADLAEELLD HTPIKDRLDA INSTVMLDQQ SWQSKMHLED MLPLGPKNKG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322988.12e-84PREDICTED: NAC domain-containing protein 45-like
TrEMBLM1DKR39e-91M1DKR3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000905963e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-15NAC domain containing protein 52